How To Use tiny intern

tinybio intern is an easy way execute bioinformatics tasks in R or Python via chat on Our intention is to let bioinformaticians have a fast web app that quickly writes code and has the ability to self correct when errors happen.

The product is especially adept at executing tasks for:

  • QC. We have the following applications installed for this:
    • fastqc
    • DESeq2
    • Seurat
    • TrimGalore
    • BBSplit
    • UMI Tools
    • samtools
    • gffread
  • Graphing. The following applications are installed for this:
    • ggplot
    • seaborn
    • matplotlib
    • pandas/numpy
    • data.table
    • dplyr
  • Dataset exploration. The following applications are installed for this:
    • Deseq2
    • Seurat
    • ClusterProfiler
    • pheatmap
    • tidyverse

The virtual machines that tinybio intern runs on has the following specs:

  • 4 vCPU
  • 4 GB RAM
  • 10 GB storage

If you would like to use tinybio intern on a stronger instance please reach out to [email protected].